The list that Mister123 provided is as good as any you're going to get. Most only have intermittent whitewater if any. The St. Johns and the Allagash are your best bets. The Androscoggin too...but that isn't really much wilderness. There is some good whitewater on the Missisquoi in Vermont, but again, it is intermittent, and campsites are few, far between, and each has their own issues, like long paths, slugs, no fires allowed, etc.
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