Rent a boat for your tour. The primary goal is whale watching and not paddling.
We whale watched from a fat double kayak in Alaska. At home you wouldn't catch me remotely in the same kayak. But I was able to focus on the whales from my stable seat.
Leave your boat home. It was meant to do most of your paddling perhaps; certainly not all of it.
If you insist on bringing your boat be aware that you must carry some safety gear per Canadian law.. Better to rent..they will have it.
2-3 Canoe/Kayak Trailer
Paddler's Truck Rack
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